SpaceTx Publications

• Consortium Paper

  • Brian Long, Jeremy Miller, The SpaceTx Consortium, “SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain”, arXiv 2301.08436 [q-bio.NC]; doi: https://doi.org/10.48550/arXiv.2301.08436

• Combined Mapping Results

  • Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. Lelieveldt, Brian D. Aevermann, Tommaso Biancalani, Charles Comiter, Christoffer Mattsson Langseth, Brian Long, Viktor Petukhov, Gabriele Scalia, Eeshit Dhaval Vaishnav, Yilin Zhao, Ed S. Lein, Richard H. Scheuermann, “Reference-based cell type matching of spatial transcriptomics data”, Scientific Reports 13, 9567 (2023); doi: https://doi.org/10.1038/s41598-023-36638-8

• Human cortex spatial transcriptomics

  • Working with human cortical tissue proved very challenging for experimental teams, but after significant development work, SpaceTx specimens led to these publications:

    • Comprehensive in situ mapping of human cortical transcriptomic cell types Langseth, C.M., Gyllborg, D., Miller, J.A. et al.Commun Biol 4, 998 (2021). doi: https://doi.org/10.1038/s42003-021-02517-z

    • Conservation and divergence in cortical cellular organization between human and mouse revealed by single-cell transcriptome imaging Rongxin Fang, Chenglong Xia, Meng Zhang, Jiang He, Jennie Close, Brian Long, Jeremy Miller, Ed Lein, Xiaowei Zhuang bioRxiv 2021.11.01.466826; doi: https://doi.org/10.1101/2021.11.01.466826